
Henkin, T. M. Regulation of gene expression by riboswitch RNAs. In: Wang, P.G. and Wong, C-H. (ed.), Comprehensive Natural Products Chemistry-II. Elsevier Press, in press.
Green, N. J., F. J. Grundy and T. M. Henkin. The T box mechanism: tRNA as a regulatory molecule. FEBS Lett., in press.
Henkin, T. M. 2009. “Post-transcriptional regulation,” In M. Schaechter (ed.), Encyclopedia of Microbiology, 3rd edition, pp. 342-356. Elsevier Press, Oxford, UK.
Henkin TM. 2009. Analysis of tRNA-directed transcription antitermination in the T box system in vivo. Methods Mol Biol. 540:281-90.
Henkin TM. 2009. RNA-dependent RNA switches in bacteria. Methods Mol Biol. 540:207-14.
Gutierrez-Preciado, A., T. M. Henkin, F. J. Grundy, C. Yanofsky, and E. Merino. 2009. Biochemical features and functional implications of the RNA-based T box regulatory mechanism. Microbiol. Mol. Biol. Rev. 73:36-61.
Artsimovitch I, Henkin TM. 2009. In vitro approaches to analysis of transcription termination. Methods 47:37-43.
Henkin TM. 2008. Riboswitch RNAs: using RNA to sense cellular metabolism. Genes Dev. 22:3383-3390.
Liu, C., A. M. Smith, R. T. Fuchs, F. Ding, K Rajashankar, T. M. Henkin and A. Ke. 2008. Crystal structures of the SMK box riboswitch reveal the SAM-dependent translation inhibition mechanism. Nature Struct. Mol. Biol. 15:1076-1083.
Anupan, R., S. C. Bergmeier, N. J. Green, F. J. Grundy, T. M. Henkin, J. A. Means, A. Nayek, and J. V. Hines. 2008. 4,5-Disubstituted oxazolidinones: high affinity effectors of RNA function. Biorg. Med. Chem. Lett. 18:3541-3544.
Ontiveros-Palacios, A. M. Smith, F. J. Grundy, M. Soberon, T. M. Henkin and J. Miranda-Rios. 2008. Molecular basis for thiamin pyrophosphate recognition and gene regulation by the THI-box riboswitch. Mol. Microbiol. 67:793-803.
Tomsic, J., B. A. McDaniel, F. J. Grundy and T. M. Henkin. 2008. Natural variability in SAM-dependent riboswitches: S box elements in Bacillus subtilis exhibit differential sensitivity to SAM in vivo and in vitro. J. Bacteriol. 190:823-833.
Ataide, S., S. Wilson, T. Rogers, S. Dang, B. Roy, R. Banerjee, T. M. Henkin and M. Ibba. 2007. Mechanisms of resistance to an amino acid antibiotic that targets translation. ACS Chem. Biol. 2:819-827.
Fuchs, R. T., F. J. Grundy and T. M. Henkin. 2007. S-adenosylmethionine directly inhibits binding of 30S ribosomal subunits to the SMK box riboswitch RNA. Proc. Natl. Acad. Sci. USA. 104:4876-4880.
Henkin, T. M. and F. J. Grundy. 2006. Sensing metabolic signals with nascent RNA transcripts: The T box and S box riboswitches as paradigms. Cold Spring Harbor Symp. Quant. Biol. 71:231-237.
Grundy, F. J. and T. M. Henkin. 2006. From ribosome to riboswitch: control of gene expression in bacteria by RNA structural rearrangements. Crit. Rev. Biochem. Mol. Biol. 41:329-338.
Nelson, A., T. M. Henkin and P. F. Agris. 2006. tRNA regulation of gene expression: interaction of an mRNA 5’-UTR with a regulatory tRNA. RNA 12:1254-1261.
McDaniel, B. A. M., F. J. Grundy, V. Kurlekar, J. Tomsic and T. M. Henkin. 2006. Identification of a mutation in the Bacillus subtilis SAM synthetase gene that results in derepression of S box gene expression. J. Bacteriol. 188:3674-3681.
Fuchs, R. T., F. J. Grundy and T. M. Henkin. 2006. The SMK box is a new SAM binding RNA element that regulates translation of bacterial SAM synthetase genes. Nature Struct. Mol. Biol. 13:226-233.
McDaniel, B. A. M., F. J. Grundy and T. M. Henkin. 2005. A tertiary structural element in S box leader RNAs is required for SAM-directed transcription termination. Mol. Microbiol. 57:1008-1021.
Yousef, M. R., F. J. Grundy and T. M. Henkin. 2005. Structural transitions induced by the interaction between tRNAGly and the Bacillus subtilis glyQS T box leader RNA. J. Mol. Biol. 349:273-287.
Grundy, F. J., M. R. Yousef and T. M. Henkin. 2005. Monitoring uncharged tRNA during transcription of the Bacillus subtilis glyQS gene. J. Mol. Biol. 346: 73-81.
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