http://www.osumicrobiology.org/homepages/artsimovitch/sequences/pVSXXX.seq

name

description

AbR

Seq

pVS4

recreating 312 to attain high induction levels: XhoI to XbaI fragment of  cloned between the same sites of pIA299

Amp

Seq

pVS5

 

MfeI to ApaI fragment from pIA452 cloned into pIA423

Amp

Seq

pVS6

 

XbaI-HindIII fragment from pIA446 cloned into LITMUS28

Amp

Seq

pVS7

 

BglII-XbaI fragment from pVS6 cloned into the same sites of pIA462

Tet

Seq

pVS8

EcoRIQ111 mutant amplified from pEQ111m with oligos

159 and 160 and cloned between NdeI and SapI sites of pTYB1

Amp

Seq

pVS9

EcoRIQ111 mutant amplified from pEQ111m with oligos

159 and 160 and cloned between NdeI and XhoI sites of pET33

Kn

Seq

pVS10

 

E. coli RNAP overexpression vector: all subunits = a,β,β’, and w.

His6 tag at the C-terminus of β’

Amp

Seq

pVS11

 

E.coli dksA in pTYB12, cloned between BsmI and PstI, has an extra A at the N-terminus after cleavage

Amp

Seq

pVS12

 

ECOLI rfaH in pTYB1, cloned between NdeI and SapI, the C-terminal L is replaced by A, to improve intein cleavage

Amp

Seq

pVS13

 

VCHOL rfaH in pTYB1, cloned between NdeI and SapI, the C-terminal T is replaced by A, to improve intein cleavage

Amp

Seq

pVS14

 

β' SI3 deletion in pVS10 - recloned BsmI-HindIII fragment from pIA301

Amp

Seq

pVS15

 

β ' T790L in pIA299 ; SDM with oligos 327+328

Amp

Seq

pVS16

 

β ' T790A in pIA299;  SDM with oligos 325+326

Amp

Seq

pVS17

 

 E.coli rpoH cloned between Mva1269I and NotI of pTYB12

Amp

Seq

pVS18

 

E.coli dksA Asp71Asn,Asp74Asn in pVS11,

SDM with oligos 408+409

Amp

Seq

pVS19

 

E.coli dksA Asp71Ala,Asp74Ala in pVS11,

SDM with oligos 410+411

Amp

Seq

pVS20

 

RfaH domain1/N-term PCR cloned into NdeI-SapI sites of

pTYB1 (SapI is gone in the final clone)

Amp

Seq

pVS21

 

RfaH domain2/C-term PCR cloned into NdeI-SapI sites of

pTYB1 (SapI is gone in the final clone)

Amp

Seq

pVS25

 

T. thermophilus greA: PCR with oligos 513+514 cloned between PstI and BsmI of pTYB12

Amp

Seq

pVS26

 

T. thermophilus gfhI: PCR with oligos 511+512 cloned between SalI and BsmI of pTYB12

Amp

Seq

pVS28

 

DbpA in pTYB12

Amp

Seq

pVS29

 

SrmB in pTYB12

Amp

Seq

pVS35

 

β ' Y457H: SbfI to BsmI fragment from pIA521 recloned into pVS10

Amp

Seq

pVS36

 

β ' N458S: SbfI to BsmI fragment from pIA521 recloned into pVS10

Amp

Seq

pVS40

 

T7A1 - consensus ops -scrambled ops in pIA416

Amp

Seq

pVS46

 

T7A1 - scrambled ops in pIA416

Amp

Seq

pVS47

 

YacL in pTYB12: PCR 649-648 cloned between BsmI and SalI sites

Amp

Seq

pVS48

 

β’ F773V from pIA387 cloned between BsmI and HindIII sites of pVS10; silent SnaBI site

Amp

Seq

pVS49

 

β’ IS774 (silent EarI site) from pIA388 cloned between BsmI and HindIII sites of pVS10

Amp

Seq

pVS50

 

β’ 672,673DD  in pVS10

Amp

Seq

pVS51

 

deletions of the β’ C-terminal CC residues 665-671and 674-680 in pVS10

Amp

Seq

pVS53

 

T7A1 - consensus ops - consensus ops in pIA416

Amp

Seq

pVS54

 

T7A1 - scrambled ops - scrambled ops in pIA416

Amp

Seq

pVS55

 

T7A1  - scrambled ops - consensus ops in pIA416

 

Amp

Seq

pVS56

 

RfaH E. coli + HMK (C-term): genomic PCR 58-746 cloned into NdeI and SapI of pTYB1

Amp

Seq

pVS57

 

α-His6β (D226-350)- β’: moved NcoI-SbfI fragment from pIA319 (rifS) into pIA679

Amp

Seq

pVS58

 

T. thermophilus NusG cloned between NdeI and NotI sites of pTYB12;genomic PCR with oligos 392+742

Amp

Seq

pVS60

 

T. thermophilus RpoD in pTYB12 714+715

Amp

Seq

pVS61

 

RfaH R23A in pIA432; silent XhoI site

Kn

Seq

pVS62

 

RfaH R73D in pIA432; SacII site disappears (SDM with 930+931)

Kn

Seq

pVS63

 

MTUBE RbpA in pTYB12: genomic PCR with 894+895 cloned into

BsmI and PstI of pTYB12

Amp

Seq

pVS66

 

RfaH R73A in pIA432; SacII site disappears

Kn

Seq

pVS67

 

RfaH M140D in pIA432; silent BglII site

Kn

Seq

pVS68

 

RfaH L143Din pIA432; no sites

Kn

Seq

pVS69

 

ActX in pTYB12: genomic PCR w/883+884 cloned into BsmI and PstI of pTYB12

Amp

Seq

pVS101

 

E.coli crl in pTYB12 genomic PCR with 988+989 cloned into Mva1269I and PstI

Amp

Seq

pVS103

 

RfaH pIA432::H152I (PCR 92+1074)

Kn

Seq

pVS104

 

RfaH pIA432::A122P (1075+1076)

Kn

Seq

pVS109

 

GreB T141E in pIA576; SDM with oligos 1135+1136

Kn

Seq

pVS110

GreB S122E in pIA576; SDM with oligos 1133+1134

Kn

Seq

pVS111

GreB M124E in pIA576; SDM with oligos 1131+1132

Kn

Seq

pVS112

GreB I118E in pIA576; SDM with oligos 1137+1138

Kn

Seq